species:   Cocin
pid:       PID1271
parent:    cci-milR-17
paralog:   
locus:     scaffold_185:35883-35925
matures:   ['UAGCUGUUCGUAAAUCAAGC', 'CUGAUUUACGAACAGCUACC']
srr:       SRR9972094
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972094.cram scaffold_185:35883-35925

2 out of bounds
19 alignments
17 proper strand
17 stranded perfect matches

****************************************** 
UAGCUGUUCGUAAAUCAAGCCUCUGAUUUACGAACAGCUACCU
(((((((((((((((((......)))))))))))))))))...
UAGCUGUUCGUAAAUCAAGC----------------------- l=20 a=3 c
----------------------CUGAUUUACGAACAGCUACC- l=20 a=0 c*
UAGCUGUUCGUAAAUCAAGCCU--------------------- l=22 a=8 ma
----------------------CUGAUUUACGAACAGCUACC- l=20 a=0 ma*

------------------------GAUUUACGAACAGCUACCU l=19 a=1 
----UGUUCGUAAAUCAAGCCUCUGA----------------- l=22 a=1 
UAGCUGUUCGUAAAUCAAGC----------------------- l=20 a=3 (c)
UAGCUGUUCGUAAAUCAAGCC---------------------- l=21 a=4 
UAGCUGUUCGUAAAUCAAGCCU--------------------- l=22 a=8 (ma)

mb-01011
ax-1011011
ku-01
ss-111111111110
fn-111
